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Urmas Kõljalg
University of Tartu
Tartu, Estonia
14 articles by this author
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Linking ...
Conference Abstract
Linking Between Molecular and Biodiversity Data: A BiCIKL Perspective
    Joana Paupério,     Vikas Gupta,     Vishnukumar Balavenkataraman Kadhirvelu,     Kessy Abarenkov,     Wouter Addink,     Donat Agosti,     Olaf Bánki, Josephine Burgin, Marcus Ernst,     Tobias Frøslev,     Quentin Groom, Anton Güntsch, Suran Jayathilaka,     Sam Leeflang, Urmas Kõljalg,     Joe Miller,     Guido Sautter,     Lyubomir Penev, Guy Cochrane
10.3897/biss.8.135646
 28-08-2024
 Unique: 452 | Total: 519  | Access Period:
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Beyond ...
Conference Abstract
Beyond BiCIKL: Towards Building an AI-Assisted “Biodiversity Supergraph”
    Lyubomir Penev,     Dimitrios Koureas,     Quentin Groom,     Jerry Lanfear,     Donat Agosti,     Ana Casino,     Joe Miller, Guy Cochrane,     Olaf Bánki, Urmas Kõljalg,     Patrick Ruch,     Anton Güntsch,     Jose Benito Gonzalez Lopez,     Patricia Mergen,     Joana Pauperio,     Tobias Kuhn, Nikos Minadakis,     Vincent Smith, Christos Arvanitidis
10.3897/biss.8.135550
 27-08-2024
 Unique: 617 | Total: 746  | Access Period:
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Improving ...
Conference Abstract
Improving FAIRness of eDNA and Metabarcoding Data: Standards and tools for European Nucleotide Archive data deposition
    Joana Paupério,     Vikas Gupta, Josephine Burgin, Suran Jayathilaka,     Jerry Lanfear,     Kessy Abarenkov, Urmas Kõljalg,     Lyubomir Penev, Guy Cochrane
10.3897/biss.7.111835
 30-08-2023
 Unique: 1007 | Total: 1275  | Access Period:
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The ...
Conference Abstract
The Biodiversity Knowledge Hub (BKH): A Crosspoint and Knowledge Broker for FAIR and Linked Biodiversity Data
    Lyubomir Penev,     Dimitrios Koureas,     Quentin Groom,     Jerry Lanfear,     Donat Agosti,     Ana Casino,     Joe Miller, Guy Cochrane,     Joana Pauperio,     Olaf Bánki,     Wouter Addink, Urmas Kõljalg,     Patrick Ruch,     Kristina Hristova,     Boris Barov, Madeira Madeira Scauri, Sara Montinaro,     Lucia Vaira,     Nicola Fiore, Elizabeth Bamford, Christos Arvanitidis
10.3897/biss.7.111482
 24-08-2023
 Unique: 1002 | Total: 1369  | Access Period:
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UNITE ...
Conference Abstract
UNITE Species Hypotheses Matching Analysis
    Kessy Abarenkov, Urmas Kõljalg,     R. Henrik Nilsson
10.3897/biss.6.93856
 23-08-2022
 Unique: 1926 | Total: 2610  | Access Period:
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Enabling ...
Conference Abstract
Enabling Community Curation of Biological Source Annotations of Molecular Data Through PlutoF and the ELIXIR Contextual Data Clearinghouse
    Vishnukumar Balavenkataraman Kadhirvelu,     Kessy Abarenkov, Allan Zirk,     Joana Paupério, Guy Cochrane, Suran Jayathilaka,     Olaf Bánki,     Jerry Lanfear, Filipp Ivanov, Timo Piirmann, Raivo Pöhönen, Urmas Kõljalg
10.3897/biss.6.93595
 23-08-2022
 Unique: 1267 | Total: 1704  | Access Period:
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Third-party ...
Conference Abstract
Third-party Annotations: Linking PlutoF platform and the ELIXIR Contextual Data ClearingHouse for the reporting of source material annotation gaps and inaccuracies
    Kessy Abarenkov, Allan Zirk,     Kadri Põldmaa, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov,     Kristjan Adojaan, Urmas Kõljalg
10.3897/biss.5.74249
 10-09-2021
 Unique: 1713 | Total: 2505  | Access Period:
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Towards ...
Conference Abstract
Towards Interlinked FAIR Biodiversity Knowledge: The BiCIKL perspective
    Lyubomir Penev,     Dimitrios Koureas,     Quentin Groom,     Jerry Lanfear,     Donat Agosti,     Ana Casino,     Joe Miller, Christos Arvanitidis, Guy Cochrane,     Boris Barov,     Donald Hobern,     Olaf Banki,     Wouter Addink, Urmas Kõljalg,     Patrick Ruch,     Kyle Copas,     Patricia Mergen,     Anton Güntsch,     Laurence Benichou,     Jose Benito Gonzalez Lopez
10.3897/biss.5.74233
 10-09-2021
 Unique: 1818 | Total: 3080  | Access Period:
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Mapping ...
Conference Abstract
Mapping and Publishing Sequence-Derived Data through Biodiversity Data Platforms
    Dmitry Schigel, Anders Andersson, Andrew Bissett,     Anders Finstad, Frode Fossøy, Marie Grosjean, Michael Hope, Urmas Kõljalg, Daniel Lundin,     R. Henrik Nilsson,     Maria Prager,     Thomas Jeppesen, Cecilie Svenningsen
10.3897/biss.4.59212
 09-10-2020
 Unique: 1860 | Total: 2680  | Access Period:
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The ...
Conference Abstract
The UNITE Database for Molecular Identification and for Communicating Fungal Species
Urmas Kõljalg,     Kessy Abarenkov,     R. Henrik Nilsson,     Karl-Henrik Larsson, Andy F.S. Taylor
10.3897/biss.3.37402
 26-06-2019
 Unique: 2227 | Total: 3399  | Access Period:
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PlutoF: ...
Conference Abstract
PlutoF: Biodiversity data management platform for the complete data lifecycle
Urmas Kõljalg,     Kessy Abarenkov, Allan Zirk,     Veljo Runnel, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov
10.3897/biss.3.37398
 26-06-2019
 Unique: 1911 | Total: 2815  | Access Period:
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Deep ...
Conference Abstract
Deep Relations in Nordic and Baltic Biodiversity e-Infrastructures (DeepDive)
    Matthias Obst, Jesper Bladt, Frank Hanssen,     Holger Dettki, Anders Telenius, Tapani Lahti, Urmas Kõljalg,     Pawel Wasowicz
10.3897/biss.3.37343
 26-06-2019
 Unique: 1603 | Total: 2408  | Access Period:
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