Biodiversity Information Science and Standards :
Conference Abstract
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Corresponding author: Lyubomir Penev (l.penev@pensoft.net)
Received: 08 Aug 2022 | Published: 23 Aug 2022
© 2022 Lyubomir Penev, Mariya Dimitrova, Georgi Zhelezov, Teodor Georgiev
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Penev L, Dimitrova M, Zhelezov G, Georgiev T (2022) The OpenBiodiv Knowledge Graph Rebuilt: A semantic hub on top of the ARPHA-published content and the Biodiversity Literature Repository. Biodiversity Information Science and Standards 6: e91357. https://doi.org/10.3897/biss.6.91357
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OpenBiodiv is a complex ecosystem of tools and services for RDF conversion of XML narratives of biodiversity articles including Darwin Core data into Linked Open Data (LOD), running on top of a graph database. OpenBiodiv provides four main types of services:
Conversion of such data into RDF follows a general semantic model expressed in the OpenBiodiv-O ontology, an extension of the Treatment Ontology for knowledge representation of current and legacy biodiversity publications (
OpenBiodiv is designed for a wide range of users who are interested in a deep-level bibliographic exploration, an ontology-linked search of various data elements (e.g., specimens, sequences, taxon concepts, persons), or co-existence of named entities (e.g., taxon names with a possible biotic relationships between them, or taxon names and potential habitats of occupation) in pre-defined sections of the articles. The SPARQL endpoint allows complex queries of various kinds (
linked open data, RDF, ontology, biodiversity knowledge graph
Lyubomir Penev, Teodor Georgiev
TDWG 2022
The BiCIKL project receives funding from the European Union's Horizon 2020 Research and Innovation Action under grant agreement No 101007492.
BiCIKL - Biodiversity Community Integrated Knowledge Library