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  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">63</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:0E0032F4-55AE-5263-8B3C-F4DD637C30C2</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">Biodiversity Information Science and Standards</journal-title>
        <abbrev-journal-title xml:lang="en">BISS</abbrev-journal-title>
      </journal-title-group>
      <issn pub-type="epub">2535-0897</issn>
      <publisher>
        <publisher-name>Pensoft Publishers</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.3897/biss.9.180578</article-id>
      <article-id pub-id-type="publisher-id">180578</article-id>
      <article-id pub-id-type="manuscript">29055</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Conference Abstract</subject>
        </subj-group>
        <subj-group subj-group-type="conference-part">
          <subject>6799160 - Enhancing the FAIRness of biological survey data with Darwin Core and the Humboldt extension</subject>
        </subj-group>
        <subj-group subj-group-type="biological_taxon">
          <subject>Aves</subject>
        </subj-group>
        <subj-group subj-group-type="scientific_subject">
          <subject>Bioinformatics</subject>
          <subject>Birdwatching</subject>
          <subject>Conservation</subject>
          <subject> Care and Monitoring</subject>
          <subject>Data Management</subject>
          <subject>Open access publishing</subject>
          <subject>Species Inventories</subject>
        </subj-group>
        <subj-group subj-group-type="geographical_area">
          <subject>Belgium</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Structuring Biological Survey Metadata for Reuse: Implementing the Humboldt Extension in Flemish Bird Monitoring Datasets on GBIF</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Cooleman</surname>
            <given-names>Stijn</given-names>
          </name>
          <email xlink:type="simple">s.cooleman@biodiversity.be</email>
          <uri content-type="orcid">https://orcid.org/0000-0003-3029-0451</uri>
          <xref ref-type="aff" rid="A1">1</xref>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Heughebaert</surname>
            <given-names>André</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-7839-5300</uri>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Brosens</surname>
            <given-names>Dimitri</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-0846-9116</uri>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line content-type="verbatim">Belgian Biodiversity Platform, Brussels, Belgium</addr-line>
        <institution>Belgian Biodiversity Platform</institution>
        <addr-line content-type="city">Brussels</addr-line>
        <country>Belgium</country>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line content-type="verbatim">Research Institute for Nature and Forest (INBO), Brussels, Belgium</addr-line>
        <institution>Research Institute for Nature and Forest (INBO)</institution>
        <addr-line content-type="city">Brussels</addr-line>
        <country>Belgium</country>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding author: Stijn Cooleman (<email xlink:type="simple">s.cooleman@biodiversity.be</email>).</p>
        </fn>
        <fn fn-type="edited-by">
          <p>Academic editor: </p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2025</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>28</day>
        <month>11</month>
        <year>2025</year>
      </pub-date>
      <volume>9</volume>
      <elocation-id>e180578</elocation-id>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/03606185-A25D-539B-B62D-40323382323E">03606185-A25D-539B-B62D-40323382323E</uri>
      <permissions>
        <copyright-statement>Stijn Cooleman, André Heughebaert, Dimitri Brosens</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">
          <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <label>Abstract</label>
        <p>The effective reuse of biodiversity data is essential for informing evidence-based policy. As the Global Biodiversity Information Facility (<ext-link ext-link-type="uri" xlink:href="https://www.gbif.org/">GBIF</ext-link>) increasingly aggregates data from diverse biological surveys, machine-readable metadata becomes progressively crucial. Structuring survey metadata from textual descriptions into standardized format improves their comparability and alignment with the <ext-link ext-link-type="uri" xlink:href="https://force11.org/info/the-fair-data-principles/">FAIR</ext-link> (Findable, Accessible, Interoperable, Reusable) principles (<xref ref-type="bibr" rid="B13717185">Wilkinson et al. 2016</xref>). The <ext-link ext-link-type="uri" xlink:href="http://eco.tdwg.org/">Humboldt Extension for Ecological Inventories</ext-link> (<xref ref-type="bibr" rid="B13716910">TDWG Humboldt Extension Task Group 2024</xref>) provides a controlled vocabulary to capture key methodological details of surveys and monitoring, enabling more robust analyses of biodiversity indices across spatial and temporal scales.</p>
        <p>At the Belgian Biodiversity Platform (<ext-link ext-link-type="uri" xlink:href="https://www.biodiversity.be/">BBPF</ext-link>), we apply the Humboldt Extension guidelines to enhance two bird monitoring datasets on GBIF. Although both represent counts of observed birds in Flemish areas, they differ in spatial scope and methodology: the<ext-link ext-link-type="uri" xlink:href="https://www.gbif.org/dataset/99047b1e-ee53-4053-ba69-2e28eaaa45d9"> Common Breeding bird monitoring in Flanders</ext-link> (<xref ref-type="bibr" rid="B13538059">Piesschaert et al. 2025</xref>) dataset, published by the Research Institute for Nature and Forest (<ext-link ext-link-type="uri" xlink:href="https://www.vlaanderen.be/inbo/">INBO</ext-link>), uses point counts across 1x1 km squares throughout the entire Flemish region, while the<ext-link ext-link-type="uri" xlink:href="https://www.gbif.org/dataset/dde71542-ad2d-4ec7-a93c-eb18bc0f432b"> Bird census counts at the Zwin Nature Park</ext-link> (<xref ref-type="bibr" rid="B13538050">Faveyts and Cooleman 2025</xref>) dataset, published by the BBPF, combines point and transect counts within one location.</p>
        <p>In this presentation, we review our practices for selecting and mapping Humboldt Extension terms in both sampling-event datasets. We thereby highlight our findings on how to structure their events’ metadata hierarchically to reflect spatial nesting, sampling effort, and taxonomic scope. For instance, both protocols focus on the same target taxonomic scope at the class' rank (Aves). A critical distinction, however, is that only the Common Breeding bird monitoring protocol excludes certain behavior-based observations of species groups breeding outside the counting area, such as foraging gulls (Larinae) and herons (Ardeinae) or corvids (Corvidae) in flocks flying over. Consequently, the <italic>excludedTaxonomicScope</italic> term is technically appropriate for mapping that methodological difference. Generically, we propose a schema that facilitates the identification of protocol-specific nuances and supports the more accurate derivation of species densities, abundances, and absences.</p>
        <p>Implementing the Humboldt Extension to Darwin Core in these real-world cases demonstrates the practical value of structured metadata for enhancing biodiversity data interoperability and reusability. This standardization generally contributes to meeting targets of the <ext-link ext-link-type="uri" xlink:href="https://www.cbd.int/gbf">Global Biodiversity Framework</ext-link>.</p>
      </abstract>
      <kwd-group>
        <label>Keywords</label>
        <kwd>ecological inventories</kwd>
        <kwd>data mapping</kwd>
        <kwd>interoperable</kwd>
        <kwd>science support</kwd>
      </kwd-group>
      <counts>
        <fig-count count="0"/>
        <table-count count="0"/>
        <ref-count count="4"/>
      </counts>
    </article-meta>
    <notes>
      <sec sec-type="Presenting author">
        <title>Presenting author</title>
        <p>Stijn Cooleman</p>
      </sec>
      <sec sec-type="Presented at">
        <title>Presented at</title>
        <p>Living Data 2025</p>
      </sec>
    </notes>
  </front>
  
  <back>
    <sec sec-type="Conflicts of interest">
      <title>Conflicts of interest</title>
      <p>No conflict of interest to declare</p>
      <p>Disclaimer: This article is (co-)authored by any of the Editors-in-Chief, Managing Editors or their deputies in this journal.</p>
    </sec>
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  </back>
</article>
