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  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">63</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:0E0032F4-55AE-5263-8B3C-F4DD637C30C2</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">Biodiversity Information Science and Standards</journal-title>
        <abbrev-journal-title xml:lang="en">BISS</abbrev-journal-title>
      </journal-title-group>
      <issn pub-type="epub">2535-0897</issn>
      <publisher>
        <publisher-name>Pensoft Publishers</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.3897/biss.9.180280</article-id>
      <article-id pub-id-type="publisher-id">180280</article-id>
      <article-id pub-id-type="manuscript">28997</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Conference Abstract</subject>
        </subj-group>
        <subj-group subj-group-type="conference-part">
          <subject>6803199 - Enhancing Data Policy &amp; Biodiversity Monitoring: Quality, Gap Analysis &amp; Environmental Integration</subject>
        </subj-group>
        <subj-group subj-group-type="biological_taxon">
          <subject>Animalia</subject>
          <subject>Plantae</subject>
        </subj-group>
        <subj-group subj-group-type="scientific_subject">
          <subject>Computer &amp; Information sciences</subject>
          <subject>Species interactions</subject>
        </subj-group>
        <subj-group subj-group-type="geographical_area">
          <subject>Africa</subject>
          <subject>Americas</subject>
          <subject>Asia</subject>
          <subject>Europe</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Machine-Actionable Metadata in Practice: Lessons From Automating FAIR Assessment in Plant-Pollinator Datasets</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Drucker</surname>
            <given-names>Debora P</given-names>
          </name>
          <email xlink:type="simple">debora.drucker@embrapa.br</email>
          <uri content-type="orcid">https://orcid.org/0000-0003-4177-1322</uri>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Soares</surname>
            <given-names>Filipi Miranda</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-0674-7960</uri>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Poelen</surname>
            <given-names>Jorrit</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0003-3138-4118</uri>
          <xref ref-type="aff" rid="A3">3</xref>
          <xref ref-type="aff" rid="A4">4</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Salim</surname>
            <given-names>José Augusto</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-8675-7068</uri>
          <xref ref-type="aff" rid="A5">5</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line content-type="verbatim">Embrapa, Campinas, Brazil</addr-line>
        <institution>Embrapa</institution>
        <addr-line content-type="city">Campinas</addr-line>
        <country>Brazil</country>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line content-type="verbatim">INRAE, MISTEA, Montpellier, France</addr-line>
        <institution>INRAE, MISTEA</institution>
        <addr-line content-type="city">Montpellier</addr-line>
        <country>France</country>
      </aff>
      <aff id="A3">
        <label>3</label>
        <addr-line content-type="verbatim">UC Santa Barbara, Santa Barbara, CA, United States of America</addr-line>
        <institution>UC Santa Barbara</institution>
        <addr-line content-type="city">Santa Barbara, CA</addr-line>
        <country>United States of America</country>
      </aff>
      <aff id="A4">
        <label>4</label>
        <addr-line content-type="verbatim">Ronin Institute, Montclair, NJ, United States of America</addr-line>
        <institution>Ronin Institute</institution>
        <addr-line content-type="city">Montclair, NJ</addr-line>
        <country>United States of America</country>
      </aff>
      <aff id="A5">
        <label>5</label>
        <addr-line content-type="verbatim">Universidade de São Paulo, São Paulo, Brazil</addr-line>
        <institution>Universidade de São Paulo</institution>
        <addr-line content-type="city">São Paulo</addr-line>
        <country>Brazil</country>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding author: Debora P Drucker (<email xlink:type="simple">debora.drucker@embrapa.br</email>).</p>
        </fn>
        <fn fn-type="edited-by">
          <p>Academic editor: </p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2025</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>02</day>
        <month>12</month>
        <year>2025</year>
      </pub-date>
      <volume>9</volume>
      <elocation-id>e180280</elocation-id>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/38FD3A24-125E-5FD8-9CAF-3562258149BB">38FD3A24-125E-5FD8-9CAF-3562258149BB</uri>
      <permissions>
        <copyright-statement>Debora P Drucker, Filipi Miranda Soares, Jorrit Poelen, José Augusto Salim</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">
          <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <label>Abstract</label>
        <p>Plant-pollinator interactions play a pivotal role in ecosystem functioning and sustainable agriculture. However, plant-polinator datasets are scattered across various networks, in country-specific initiatives, and stored in isolated silos, making them difficult to access by scientists and decision-makers. By promoting the adoption of Findable, Acessible, Interoperable, and Reusable (FAIR) data standards (<xref ref-type="bibr" rid="B13618074">Wilkinson et al. 2016</xref>) across multiple initiatives worldwide, we are working to transform the fragmented nature of these datasets and make data on plant-pollinator interactions widely available. </p>
        <p>As the biodiversity community advances towards FAIR data, machine-actionable metadata has emerged as a critical enabler for scalable data assessment, discovery, and reuse. However, while FAIR principles emphasize machine-readability, many datasets are still evaluated manually or lack structured metadata entirely, limiting their integration into global platforms. This study shares practical insights from the WorldFAIR Agricultural Biodiversity Case Study, in which we operationalized machine-actionable FAIR metadata for the review of plant-pollinator interaction datasets (<xref ref-type="bibr" rid="B13607382">Drucker et al. 2024</xref>).</p>
        <p>We developed a semi-automated workflow to assist in evaluating datasets against the FAIR principles using tools from the Global Biotic Interactions initiative (GloBI, <xref ref-type="bibr" rid="B13450948">Poelen et al. 2014</xref>). The GloBI bots "Nomer" and "Elton" can read structured metadata from standard vocabularies such as Darwin Core (<ext-link ext-link-type="uri" xlink:href="https://dwc.tdwg.org/">DwC</ext-link>), Ecological Metadata Language (<ext-link ext-link-type="uri" xlink:href="https://eml.ecoinformatics.org">EML</ext-link>), and the Plant-Pollinator Interactions (<ext-link ext-link-type="uri" xlink:href="https://ppi.rebipp.org.br">PPI</ext-link>) vocabulary. Nomer focuses on taxonomic alignment with several taxonomic catalogues, such as <ext-link ext-link-type="uri" xlink:href="https://www.gbif.org/dataset/d7dddbf4-2cf0-4f39-9b2a-bb099caae36c">GBIF</ext-link><ext-link ext-link-type="uri" xlink:href="https://www.gbif.org/dataset/d7dddbf4-2cf0-4f39-9b2a-bb099caae36c"> Backbone</ext-link> and <ext-link ext-link-type="uri" xlink:href="https://www.catalogueoflife.org">Catalogue of Life</ext-link>. Elton extracts species interactions from datasets of various structures and formats, including <ext-link ext-link-type="uri" xlink:href="https://ipt.gbif.org/manual/en/ipt/latest/dwca-guide">DwC-Archives</ext-link><ext-link ext-link-type="uri" xlink:href="https://ipt.gbif.org/manual/en/ipt/latest/dwca-guide">.</ext-link></p>
        <p>By relying on machine-readable metadata, the bots were able to flag inconsistencies, suggest improvements, and generate repeatable reports across pilot projects in Argentina, Brazil, the African continent, Kenya, Colombia, East Africa, Central Asia, and the USA (for example, <xref ref-type="bibr" rid="B13618056">Elton et al. 2025</xref>). This helped researchers assess dataset interoperability without needing full access to the raw data, a crucial feature given legal and institutional access constraints. To make the data review report readable for researchers, GloBI's bots produce a document resembling a data publication, complete with a title, authors, publication date, abstract, introduction, and other relevant sections. </p>
        <p>Our results underscore the transformative role of machine-actionable metadata in biodiversity data governance. Automating FAIR assessments not only increases transparency and repeatability but also accelerates the integration of datasets into platforms like GloBI. While human expertise remains essential, tools like Nomer and Elton demonstrate that FAIR assessment can evolve beyond checklists to become dynamic, scalable, and integrated into the data lifecycle. Resources and code are openly available in the online repositories Zenodo*<xref ref-type="fn" rid="FN13713020">3</xref> and GitHub*<xref ref-type="fn" rid="FN13713019">2</xref>, and are summarized in the GloBI platform*<xref ref-type="fn" rid="FN13713017">1</xref>.</p>
        <p>To help alleviate the burden of manually reviewing data as part of scientific publication review, we propose deploying domain-specific, automated data review processes that enable researchers to better understand how to make their data easier to review and reuse. Recognizing that publishing reusable, integrated data remains mostly a manual process, we recommend that plant-pollinator and species interaction datasets be registered with one or more infrastructures (e.g., GloBI, GBIF) to benefit from the domain-specific data review services they offer. We suggest that data publishers continue to collaborate on building, maintaining, and improving similar infrastructures to assess and increase the quality and FAIRness of published scientific data.</p>
        <p>Through the adoption of standards such as Ecological Metadata Language, Darwin Core, Plant-Pollinator Interactions Vocabulary, and <ext-link ext-link-type="uri" xlink:href="https://obofoundry.org/ontology/ro.html">Relation Ontology</ext-link>, we aim to enhance the understanding of how plant-pollinator interactions contribute to sustaining life on Earth while ensuring that data is easily findable, accessible, interoperable, and reusable for further research and analysis (FAIR).</p>
      </abstract>
      <kwd-group>
        <label>Keywords</label>
        <kwd>biotic interactions</kwd>
        <kwd>interoperability</kwd>
        <kwd>data review</kwd>
        <kwd>data publication</kwd>
      </kwd-group>
      <counts>
        <fig-count count="0"/>
        <table-count count="0"/>
        <ref-count count="4"/>
      </counts>
    </article-meta>
    <notes>
      <sec sec-type="Presenting author">
        <title>Presenting author</title>
        <p>Debora P Drucker</p>
      </sec>
      <sec sec-type="Presented at">
        <title>Presented at</title>
        <p>Living Data 2025</p>
      </sec>
      <sec sec-type="Grant title">
        <title>Grant title</title>
        <p>This work was developed as part of the Global cooperation on FAIR data policy and practice (WorldFAIR), funded by the EC HORIZON-WIDERA-2021-ERA-01-41 Coordination and Support Action under Grant Agreement No. 101058393, and we acknowledge the support provided by the project partners and resources.</p>
      </sec>
    </notes>
  </front>
  
  <back>
    <ack>
      <title>Acknowledgements</title>
      <p>WorldFAIR Agricultural Biodiversity Case Study collaborators</p>
    </ack>
    <sec sec-type="Conflicts of interest">
      <title>Conflicts of interest</title>
      <p>No conflict of interest to declare</p>
      <p>Disclaimer: This article is (co-)authored by any of the Editors-in-Chief, Managing Editors or their deputies in this journal.</p>
    </sec>
    <ref-list>
      <title>References</title>
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  </back>
</article>
